Showing posts with label Conserved Metabolic Networks. Show all posts
Showing posts with label Conserved Metabolic Networks. Show all posts

Tuesday, September 24, 2013

Feeding the Microbiota: Non-Starch Polysaccharides (NSP), Resistant Starch (RS) and Mucous


RESISTANT STARCH GRANULES

"During the co-evolution of man and microbes, the human intestinal tract is colonised by some thousand species of bacteria. Gut borne microbes outnumber the total of body tissue cells by a factor of ten. Recent metagenomics analysis of the human gut microbiota has revealed the presence of some 3.3 million genes, as compared to the mere 23 thousand genes present in the cells of the human body tissues."

--Rijkers et al, Gut Microbiota in health and disease: a personalised summary of 
the 3rth workshop



Everything Our Microanimalia Do For Us
How Shall We FEED THEM?

Seed, Weed and Feed the GUT

I've talked already about many ways to seed the gut (fermented foods, SBO probiotics, dirt, etc) to complement the existing microbiota and weed the gut -- removing toxins, mercury, pathogenic overgrowth, parasites and worms.  How should we properly water and feed the gut?

The primary foods are fiber, mucous and starch that resists small intestine digestion. If the gut is diseased, crowding out pathogens and removing parasites is also important. If the microbiota lacks diversity, then diversity needs to be cultivated and nurtured.  Studies show the obese, inflamed, autistic and heart diseased lack microbiota diversity of species and phyla.

Feeding and nourishing the microbiota isn't a special skill... our ancestors thrived and survived in special microecological as well as macroecological niches... and so did the gut microbes.  How did ancestrally derived foods benefit the microbes and what do they specifically provide for us?  Do we rely on them for immunity? For activation of important immune factors (glutathione, our #1 master antioxidant)?  For activation of plant-derived antioxidants like lignans, etc?  For removal of toxic and carcinogenic bile acids?  To balance the steroid hormone pool?

Yes to all.

I like ancestral diets. They must've worked I figured because we are here...

Being Asian I enjoy starches and after regaining insulin sensitivity (after being 50 lbs overfat), I burn starches adequately during glycolytic activity. With VLC/ketosis, I had cortisol dysregulation and to heal metabolism fully I had to eat carbs regularly. Being previously metabolically broken and still recovering from some toxicity (heavy metals, contraceptive endocrine disruption), however, I don't overdo the starches because I'll notice that I regain bodyfat mega fast.  Typically intake may be 1/4 of plate at most meals).

Our family eat certain starches regularly -- carrots, radishes, steamed pumpkin, bamboo shoots, fermented sauerkraut/carrots/radishes, tubers (yellow, purple, white, small potatoes, yams), flours (tapioca, sweet potato) and soaked grains/seeds (psyllium, millet, sorghum, black sesame, rice (purple, brown, white, glutinous)).   The variety depends on what is in season and carried by the organic farms -- Mahota, FIELDS, BioFarm/Cityshop, etc.  All the above contain both fiber and resistant starches (RS) which the microbiota feed on.  Ultimately, both types of microbial food benefit us on many levels.

In fact some studies show synergism when both fiber and RS are consumed together compared to fiber alone (beta-glucan) or RS alone for insulin and glucose reduction and regulation. Behall, et al:  synergism -- MEN and WOMEN. Below is the outcomes from the female study examing the impact on BG and insulin with intake of beta-glucan + RS. The levels of both were modulated low v. high and vice versa. Higher beta-glucan and higher RS produced the most marked improvements in metabolism. High amounts of either were satisfactory as well (see yellow/insulin,  orange/glucose lines and green circles).  Low amounts of either fiber or RS, not nearly as wonderful metabolic outcomes in this study.



Beta-glucan is a special soluble fiber (NSP)-- it's not made by mammals. It's found in yeast cell walls, whole grains, and mushrooms.  It's been shown to not only affect the microbiota but also improve immune function, wound healing, metabolic dysregulation, cancer/tumour sizes, and inflammation.  A recent study tracked the fate of beta-glucan in the gut and immune lymphoid tissues.  Researchers found "these large -1,3-glucans were taken up by gastrointestinal macrophages and shuttled to reticuloendothelial tissues and bone marrow. Within the marrow, the macrophages degraded the -1,3-glucan and secreted small soluble biologically active fragments that bound to CR3 of mature bone marrow granulocytes. Once recruited from the bone marrow by an inflammatory stimulus, these granulocytes with -1,3-glucan-primed CR3 could kill iC3b-coated tumor cells."

Resistant starch (RS) is found to be quite as plentiful as beta-glucan and plant fibers however cooking breaks it down to a form that we can digest (enzymatic, mastication, acidic).  The amount remaining in a food that escapes our digestive juices varies by many factors -- species, maturity of the plant, cooking/cooling methods, food acidity, to name just a few. RS is different from beta-glucan and fiber due to its tightly bound double helical glucose polymer structure.  Yes it is coiled up like DNA....  Solubilization in cooking water 'releases' the starches into a gelatin matrix which our spit amylases and pancreatic carb-ases can breakdown to glucose for absorption in the stomach and small intestine.  Any undigested amounts enter the caecum and colon.  The amount of SFCA produced upon caecal and colon fermentation varies as well depending on an individuals microbiota species, large intestine health status, etc.

The average intake of RS in China is 14.9 g/day from wheat, rice and starch products (mung bean, sweet potato noodles); compared with average USA 3-8 g/day intake it is about 2 to 5 fold increased. However, I don't think this holds true any longer for Chinese urban dwellers. When my parents grew up in a small rural village in Taiwan (with pigs and 'home organic' e.g. subsistence farms), they were poor and only ate potatoes, yams, mung beans, rice, and vegetables with very scarce meat/fish/pork belly or chicken or eggs. I believe their childhood intake fiber and RS intake were far more than currently, if not triple or quadruple.

Combined with veggies, most people's diets contain a mix of carbohydrates: rapid digesting (simple sugars, disaccharides), slow digesting (complex carbohydrates), nonstarch polysaccharides (FIBER = b-glucan, xylan, glycan, gums, pectin, mucin, cellulose, hemi-cellulose etc), and resistant starches (RS) to fuel both our human cells and the microbiota.  Our microbiota in the large intestines will eat and ferment fiber, RS, and the mucous produced in the protective layer of the gut.

Most Dietary Starches Contain Both b-Glucan or other soluble fiber + RS
Source: Behall et al


For SIBO and intestinal permeability, it's actually healing to minimize fermentation if it is occurring pathogically in the small intestines... where it shouldn't be.  The surface of the small intestines is not designed to support extensive networks of microbial growth which requires thick mucous.  The integrity of the small intestines can easily be compromised and fail to serve its function (digestion and absorption) when inappropriate growth manages to perpetuate whether it's 'good' v 'pathogenic' bacteria, yeasts or mycobacteria or parasites/worms.

The ONE (optimal nutri eval) is one of the best tools to measure the microbial/fungal metabolic by-products in the urine by opportunistic and pathogenic species in the small intestines.  The GDX/Metametrix GI function stool test is unique to identify microbial overgrowth, dysbiosis, pancreatic digestive enzyme capacity, small intestinal fat/fiber/protein malabsorption, and parasites/worms as well as assess microbial sensitivity to herbal and pharmaceutical antimicrobials.

Diet absolutely shifts bacterial communities in the gut ecology -- simple sugars lowers the good, raises the bad. More fiber and RS both raise the good (in Bacteroidetes -- Prevotella, etc), lowers the bad (in Firmicutes -- virulent strains of clostridas, E. coli's, enterococci, streps).  This is borne out in pig, children and human studies.  Flint et al do a great review here which includes a raffinose study (fiber from legumes) that enriched and ↑ F. prausnitzii, Bifidobacterium spp.  Like many of the good gut flora, Bifidobacter tightens up the intestinal tight junctions as super tight as a nun's **ss, which is enteroproctive and immunoprotective again gastroenteritis, intestinal permeability and necrotizing enterocolitis in trials. Guess what?  Magnesium deficiency compromises Bifidobacter and intestinal permeability (or which came first?).  Bifido appears to enjoy magnesium. In rodent studies fed a mag-deficient diet, intestinal permeability and quantitative changes to cecal bifidobacteria were associated.

My kids and I have scr*wed up Bifido (not bad but could be far better -- 3.2; Brent Pottenger's Bifodobacter is over 20% more and rocks at 3.9)... and we have low mag...  Brent has also has had zero cavities and therefore zero mercury amalgams.  Perhaps my fam and I need to forage us  some raw unpasteurized human breastmilk because it is enriched with Bifido?

Below is a human study n=10 on the microbiota shifts comparing RS2 and RS4 intakes (55 grams/day x3wks, then 2 wk washout).  Even among resistant starches, there is selective species enrichment.


The authors state in the results:  "Ten human subjects consumed crackers for three weeks each containing either RS2, RS4, or native starch in a double-blind, crossover design. Multiplex sequencing of 16S rRNA tags revealed that both types of RS induced several significant compositional alterations in the fecal microbial populations, with differential effects on community structure. RS4 but not RS2 induced phylum-level changes, significantly increasing Actinobacteria and Bacteroidetes (+++)while decreasing Firmicutes(-). At the species level, the changes evoked by RS4 were increases in Bifidobacterium  adolescentis and Parabacteroides distasonis, while RS2 significantly raised the proportions of  Ruminococcus bromii and Eubacterium rectale when compared to RS4. The population shifts caused by RS4 were numerically substantial for several taxa, leading for example, to a ten-fold increase in bifidobacteria in three of the subjects, enriching them to 18–30% of the fecal microbial community. The responses to RS and their magnitudes varied between individuals, and they were reversible and tightly associated with the consumption of RS."


Similar enrichment in enterocytes occurred in a rat weanling study feeding either basal diet or RS 5% for 28 days. I like this study because it demonstrated increased glutathione (our #1 master antioxidant; I have a GSTT1 deletion so mine is mildly compromised) by over 2-fold and improved pancreatic elastase secretion (digestive enzymes) in the RS fed groups.  [***Personally I eshew all rat studies unless they're vegetarian studies because (1) rats don't have a gallbladder and (2) they're not as omnivorous as humans or pigs so the data is incomparable, particularly the (ludicrous) meat/colon ca/nitrosamine studies.]



Shifting Microbiota Communities: GI Fx Stool Test and Optimal Nutri Eval (ONE)

Brent Pottenger's case:  Recall his Prevotella, Bacteroidetes and Firmicutes are quite stunning and no biomarkers of dysbiosis.  He has likely very little mercury (no history of cavities). His diet: near carnivory, fermented full fat Greek + some veggies both raw/cook (per Pottenger's cats).  The microbiota sequencing reveals a beautiful display of healthy guts.  Previously he c/o acne and migraines which are signs of SIBO and intestinal permeability.

My case: The Prevotella, Bacteroidetes and Firmicutes (2013) are impressively improved and robust compared with the initial 2011 when I had CFS, fogginess, fraility (sarcopenia), rank mood, and on/off body fat.  The SIBO is gone except for residual dysbiotic biomarkers from a parasite and Morganella. [yes wtf I dunno where the origin was but my children also have pathogenic overgrowth or parasites but we all different. I suspect I got it from one the irresistable poopers, see below]

Would you like to do a GI fx stool test and see your microbiota and do a ONE to evaluate nutrient deficiencies, dysbiotic markers and 8OHdG (DNA damage)?  Let me know and show me!  (Cost $99 and $129, respectively, plus admin fee $50).  Let's conduct paleo gut experiments.



What had I done?
--for two years
  • gluten free, casein free, exercise/yoga (some barefoot on soil/lawn)
  • removed mercury, gold, titanium parts and oral chelation on/off
  • sleep, adrenal/gut support, antioxidants incl pycnogenol, omega-3, minerals
  • Prescript Assist, FloraMend
  • whole food diet (rainbow tubers, veggies, organic meat, lard/ghee)
  • fermented pao cai, Beijing radishes, carrots


--for two months prior to the GI fx stool test
  • Seed: Raw unpasteruized sauerkraut at nearly every meal and drank the brine, SBO probiotics
  • Weed: charcoal and bentonite clay; removed gut irritants (alcohol -- studies here and here)
  • Feed: Kraut and fiber rich foods (basmati rice, vegetables, potatoes, etc)




Energy Flux and Metabolism in Superorganisms

I consider this formula for energy flux:

Calories In (SUPERORGANISM) = Calories Out (MICROBIOTA) + Calories Out (HUMAN) + HEAT*Fluxxx



Rapid and slow digesting starches (RDS, SDS) impact blood sugars and insulin sensitivity by raising BG. The effect on insulin sensitivity and how they burn fat in the mitochondria actually depends on the individual, their insulin sensitivity and the carb/glycemic load.  See Major Paleo De-Mything.

On the other hand, insoluble or soluble fiber and RS do not raise insulin or blood sugars. In fact fiber and RS have been shown in several trials to behave like protein and omega-3 fats by raising insulin sensivity.  Both fiber and RS naturally have glycemic indices of 'zero', 'bulk' up food, increasing fecal transmit time as well as fecal microbial biomass. Combined with digestible carbs, RS and fiber both tend to prevent spiking of glucoses, thus blunting the effects of high GI (glycemic index) foods and sweets. Both fiber and RS definitely lower inflammation but appear to do so via routes which are intimately tied to the microbiota.

Role of the Gut Microbiota in Nutrition and Health




The mouth and stomach digest ~10% of our carbs and the rest 90% is digested in the small intestines if all is functioning (pancreas, gallbladder, oral amylases, GI acidity, microvilli brush border enzymes, pepsin secretion, bile, peristalsis).  What escapes small intestinal degradation is later fermented by the microbiota in the large intestines (caecum, appendix, colon) to volatile organic acids, known as short chain fats -- acetate, proprionate and butyrate.  Although microbial byproducts provide some fuel to us  and the local enterocytes in the gut ecosystem (~10% of our total energy requirements compared with ~30% in other omnivores), actually much of the butyrate and other SCFA goes to provide energy to the microbiota . See above diagram 'Fermentation -- energy for bacterial growth'.  From my reading this amount varies. The SCFA collected at the colon depends on inflammation, IBD status, diabetic v. nondiabetic, etc.  I think it reflects SIBO and intestinal permeability factors which affect the microbiota.

SCFA play a role in the immune system and metabolic pathways by as binding fat-sensor receptors such as PPAR alpha, gamma, delta and GPR41/43.

How we chew the food and shear the particle sizes of resistant starch granules determines how much may be broken down in the small intestines. The first, top diagram above shows how digestive amylases 'etch' granules of resistant starches recovered in the intestines.  Food preparation also transforms the digestibility, crosslinks and polymerization of the starch matrix.  Longer heat, higher boiling/gelatinization, and maturity of the plant are all factors that predispose to higher digestibility and potential blood sugar impacts.   Cooling the starch and adding acidity (lemon, vinegar, fermentation) all lower small intestine digestibility by changing the coagulation of starches and protecting the starch granules from enzymatic degradation. Both refridgeration and autoclaving (high moist heat) polymerize the starch chains and raise RS.

So certain foods will have more RS as a result of food prep compared to the original food:
Fried rice or 'al dente' rice versus rice boiled in large volumes of water
Cold chinese rice ball snack rolled in lard/oil and seaweed versus warm steamed white rice
Sushi rice (room temp rice, sweetener +vinegar) versus warm steamed white rice
German cold potato salad with vinegar versus a boiled LARGE American monoculture GMO potato
Whole grain wheat pasta versus overboiled white pasta

Fermentation breaks down RS
Boiled poi (more) vv. Fermented poi (less)
Unfermented cooked rice v. Fermented Indian dosa rice or idli (less)

Autoclaving polymerizes amylose so raises RS
Processed (heating/reheating process) Uncle Ben's rice (but beware of the endocrine disrupting plastic it's encased in) v. freshly cooked long grain rice (less)




Evolution of RS

The amount of resistant starch appears to me to be related to the amount of protein in the tuber or grain/seed, on cursory review. I've tried to dig further but can't find anything.  The food sources which appear to have the most RS are the starch containing foods with intact cell walls and higher protein content legumes (9.5-11.1% dal, lentils, beans), whole grains (4.5-6%), or complete proteins (2% potato; 4.8-5.9% processed non-modified PS; steamed/cooled potato 31% and roasted/cooled potato 52.5%).  Perhaps amylose and other RS protect the peptides embedded in the starch matrix for tuber and grain/seed winter storage to buffer the Ice Age chill? Sprouting and germinating grains/seeds raise protein and nutritional content, but lowers RS.  Additionally, fermentation of starches is a trade-off -- fermentation lowers RS but raises protein/vitamin content.
I GAVE HER PROBIOTICS SINCE
THE FORMULA DIDN'T HAVE
ADORABLE POOPER

Saturday, September 21, 2013

Why We Are Sick and Fat: Calories In (SUPERORGANISM) = Calories Out (MICROBIOTA) + Calories Out (HUMAN) + HEAT*Fluxxx

Gut Permeability = Why We Are Sick and Fat?
Photo credit: Gravitz. Nature, 2012.


Microbial Influence

We co-evolved with the microbes in our gut to escape pathogens, parasites, predation and starvation (emo, nutritional, mental, etc), whilst hunting for palatable food, prey and partners.  (Isn't your partner palatable?) Simultaneously we enjoy all benefits that our co-existing gut microanimalia provide -- digestion of indigestible fibers/resistant starches, butyrate/short-chain-fatty-acids, neuroendocrine modulation, boosted immunity and tolerance, to name only a few.  They weigh 1-2 kg in our daily feces, contribute to massive biofilms (slime communities) in our guts and sinuses, and line every interface where human interiors meet exteriors.  The microbiota are not a small forgotten organ any longer.

It has been realized for decades that 70-80% of human immune cells are in the GI system; I believe however a large proportion (70-80%??) of our total immune system IS the gut microbiota. The # of genes collectively in a microbiome are 150 times larger than the genome of their host human. Besides digestion and metabolism, our microbiota perform far more than we perhaps currently understand in cross-talking with the immune system, its maturation and role in homeostasis and energy balance.


Dysbiosis and Intestinal Permeability as Origins of Disease


Emerging data like the study reviewed here showing the rodent T1DM disease model was averted by the presence of a soil based microbial strain known as SFB (segmented filamentous bacteria; genus Arthromitus) confirm and highlight the vital role played by commensal gut species in our immune system. I find it notable that the hearty and robust spore-forming ones that originate from dirt sources are producing some of the most interesting scientific findings since we co-evolved with ancient dirt for millenia.

Since the vast majority of microbial fermentation occurs in the caecum, appendix, and remainder of the large colon in humans, our small intestines are nearly sterile and absent of bacteria and fungi except at the end (ileum) where commensal species take residence.  Studies on TH17, one of the important arms of the immune system, show that no TH17 cells will appear in the small intestines until commensal microbes inhabit the area. Germ-free rodents will miss an entire arm of the immune system until colonization with introduction of a SFB-containing commensals.



Toxic and Germ-free Fetuses, Babies, Children and Adults

The collective status of our guts pretty much reflects the status of our current macroecological niche for humans I think... massively insolvent, blatantly bereft of vision, and irrevocably impoverished.  In China I read everyday of villages blighted with river and ground water poisoning by illegal corporate dumping of industrial waste.  Post-modern towns are plaqued with leagues of cadium or arsenic poisoned children. Even locally in our neighborhood Pudong, Shanghai, lead toxicity was detected in many children living near manufacturing plants called Johnson Controls International Battery Inc.  In the USA, coal burning which provides 30-50% of current energy demands has tainted the air/water/soil and caused mercury and arsenic accumulation in marshes and wetlands and the flora and fauna that reside there. Birds no long sing, woo, mate or care for their young appropriately.  Mercury-toxic birds are literally the canaries in our toxic macroecological niche.  What about human canaries, our children?  I think epidemic rises in toxin related diseases are accurate and reliable reflections because toxins disrupt the intestines and microbiotia:
--AUTISM (1:50 currently compared with 15 years ago 1:10,000)
--CELIAC DISEASE (6.4-fold increase in 20 yrs, Scotland)?
--OBESITY AND METABOLIC DISEASES

Our hyper-hygiene and dirt-avoidance culture extends to the over utilization of potent broad spectrum antibiotics piled into the feed of poultry, pigs, cattle dairy/egg production and in modern conventional healthcare.  In the a new study by Stanford researchers, the mechanism for why pathogenic gut strains invade after a single course of antiobiotics has been illuminated.  Pathogenic strains C. diff and S. typhi are shown to take advantage of the abundant sialic acid and fucose sugars that are left after antibiotic extermination of 'good' commensal gut flora.  The researchers also report in a model where C. diff and S. typhi were genetically altered to fail to utilize sialic acid, expansion by the pathogens was impaired.




Modern Obesity: Inflammation, Intestinal Permeability
Modified: GREER, MORGUN, AND SHULZHENKO, 2013

Toxins Delete the Good Microflora, Stimulate the Bad Microflora

When I had toxicity from gluten, oral birth control, antibiotic overutilization, thimerosal vaccines (tetanus, annual flu, blah blah blah), titanium and mercury amalgams, I had no idea that each and every one of these factors promote pathogenic gut flora, vitamin B12 deficiency, and kill or inhibit beneficial 'good' gut flora.

 Did these toxic factors make me fat?  Absolutely.

It was not [CALORIES IN = CALORIES OUT].

Fermented Fiber Produces SCFA Which Activate Immunomodulating G-Protein Receptors (GPRs): In pubmed studies, each of the above toxic factors are highly linked to gut dysbiosis and obesity.  Stopping or eliminating each of the above eliminated subsequent inflammation and obesity for me (combined with Asian paleo + exercise).  Understanding the human superorganism anatomy and physiology gives pause to recognize the role the gut flora had in the ups/downs of my health over the decades.  Recall about ~10% of total energy expenditures are estimated to be supplied by hindgut fermentation that occurs in the caecum and colon (versus 20-30% for other omnivores).  Production of SCFA, small chain fatty acids (acetate, proprionate, butyrate), and other downstream metabolite byproducts (succinate) bind receptors known as FFA2/FFA3 and SUCNR1, respectively, that control and regulate inflammation (TNF, interleukins, NFkB) and immune function.  Metabolite sensing occurs through these G-protein receptors much like how omega-3 EPA+DHA bind 'omega-3 receptors' GPR120 and elicit their anti-inflammatory and immunomodulating actions.  FFA2 (GPR41) receptors are found in enteroendocrine cells, adipocytes, neutrophils, eosinophils and pancreatic islets; and FFA3 (GPR43), enteroendocrine cells, pancreatic islets and sympathetic ganglia.

I believe these effects on GPRs design a metabolic flux which tunes metabolism UP and DOWN based on the messages that our food, movement, minds, and microbiota co-create.  My new formula for comprehending energy balance might be...


     Calories In       = Calories Out (MICROBIOTA) + Calories Out (HUMAN) + [HEAT]*FLUXXX
(SUPERORGANISM)

Main pathways of energy metabolism for dietary fats, fiber and carbohydrates
Fermentation of indigestible fiber and resistant starch to SCFA
Photo credit: Nature Reviews



Diabesity:  Recall pesticides are highly associated with Diabesity.... Coming to China actually forced our family to go as much as we can 100% organic and non-GMO (although all labels are dubious).  In the States, when my in-laws cooked for our family I didn't have control (eg they were too cheap to buy organic).  In the USA, the organic label is also dubious to me but for the most part it's way way way better than in China.


Recent research demonstrated that glyphosate (Round-Up Ready) allows growth of pathogens and kills the friendlies in studies of intestinal microecology in chickens.  EWP studies show babies and people's toxomes contain on average 200-300 known carcinogens, chemicals, heavy metals and pesticides. 100% of all participants (n=9) in the EWG #1 Commonweal Study had metabolites of organophosphate pesticides, and 55% -- organochlorine pesticides.   Do pesticides in our food and contaminating our water/soil disrupting our gut? I would say emphatically yes.  In China, Round Up Ready sweet corn is mega popular.  China imports that and millions of metric tons of GMO cotton, soy beans, corn, rapeseed and sugar beet.

For several years now, commercialized GM cotton, papaya, sweet pepper, tomato, poplar, and petunia have been grown without public awareness.  One journalist reports that 90% of China grown cotton is GMO cotton (2008).   The report also found 40 billion tons of soybeans were imported  in 2009.  GMO Soy likely goes into thousands of Chinese products here -- (rancid) cooking oil, animal/poultry/aquaculture feed, tofu, soy milk, soy sauce, etc. 40 BILLION TONS OF GMO. Asians love their soy OY OY OY... It's truly the land of sarcopenia and soy, no? Is this behind the epidemic of obesity and diabetes in China among children, adults and elderly alike?

Chinese companies offer a ton of Glyphosate (Round Up Ready)
Source: Alibaba


Horizontal Gene Transfer.  Does horizontal gene transfer (HGT) between DNA from consumed GMO corn and corn products to our gut microbiota occur? Another emphatic YES.  How do you reverse it if your microbiota is transformed? I wish I knew... Bacteria and fungi live in biofilms and exchange DNA within the matrix.  Like a meme gone viral.  Evidence for both DNA and lectin proteins from GMO Bt corn has been found in animals and humans that consume Bt corn. The DNA was found to survive and persist for a long time in the gut/rumen.

Photo credit: Heritage J. Nature, 2004.


I talked about Bt corn previously here: 50 Shades of F*ckd and Cancer.  Every pesticide corporation has a GMO Bt corn brand.  Bt is a lectin (like gluten) and disrupts intestinal epithelium in susceptible victims which can lead to gut dysbiosis and/or death.  It was very effective pesticide in the beginning.

Rootworms and other pests have rapidly shown field resistance to nearly every brand -- Syngenta's Agrisure and Monsatan's YieldGuard.  Dupont/Dow's Herculex has not as much, therefore Monsatan has reported they are planning to incorporate Herculex to synthesize TWO TOXINS into their new SmartStax corn -- in an attempt to overcome inherent field resistance. GMO is brilliant, no?

Unfortunately significant Bt lectin protein has been detected in fetus, pregnant women and non-pregnant women in already one clinical trial. Can we look forward to double the toxins next?  Can we afford to because we are kinda 50 Shades of F*ckd already...




Boobies and Breastmilk Microbiota

Symbionts Are Everywhere:  Our microvilli produce siliac acid and fucose (9- and 6-carbon sugars) at the tips for commensal gut flora to feast and graze on. I call it 'pharming the gut'.  Again, like much of life on earth -- hominids, insects, fish, frogs, mammals -- we have evolved with gut symbionts, encouraging them to take residence and producing incentives for their maintenance.  We should strive to avoid screwing our symbionts...

The baby-mother relationship is another example of the ultimate symbiosis.

Babies receive everything from mom -- life, love, heat, immunity (IgM), food, and water.  It's one of the most symbiotic relationships on earth outside of pair-bonded couples and tight knit families and communities. The baby is born sterile with no immune system, relying on mother's immunoglobulins to handle environmental viral or microbial assaults.  If advanced hominids and other mammals outsourced 70-80% of its immune system to gut microbiota, what does the timeline for acquisition of gut flora look like in babies?

Photo credit: Fernandez L et al, 2013.


Initially breastmilk was considered sterile but like many things in science, this was inaccurate. Colostrum contains over 700 live organisms (European Society of Neurogastroenterology and Motility: Gut Microbiota Worldwatch). Are these important? Why? Lysates of strains such as Lactobacillus and Bifodobacter have been shown to tighten up the intestinal tight junctions. Several strains in probiotics have been shown to be associated reduced mortality in NICU settings and against often fatal necrotizing enteric colitis.

Although babies are born with leaky guts to accomodate mothers' large proteins direct access into blood and lymph circulation  (immunoglobulins, IgM), they appear to get a lot of help from natural commensals to switch and develop intestinal impermeability.

Photo credit: Cabrera-Rubio et al, 2012.

Where does mammary microflora originate from? Some researchers hypothesize there is a special conduit that transfers gut flora to the mammary glands, an 'entero-mammary pathway'.  Lymph circulation? It is unknown and not entirely elucidated.  Researchers looked at microbiota in breast milk (at 0 mon/colostrum, 1mon and 6 months), different areas of the mother's body and compared flora between elective C-section and vaginal/non-elective C-sections. Breastmilk from C-section moms resembles mouth/oral and skin flora; whereas, breastmilk from moms who went through vaginal birth or some modicum of vaginal delivery that ended in non-elective C-section (that was me) showed flora that matched the gut and feces. Birth does something to make proper milk.  "The fact that the milk microbiome of mothers who gave birth by nonelective cesarean section had a normal microbial composition that was comparable to that of breast milk from mothers who delivered vaginally suggests that physiologic (eg, hormonal) changes produced in the mother during the labor process may influence the composition of the bacterial community."

Another finding from this study was 'Milk from obese mothers tended to contain a different and less diverse bacterial community compared with milk from normal weight mothers.'

Are Toxins + Early Post-Natal Gluten Exposure J*cking Us?  Gluten peptides also traverse and are dispensed to the baby during lactation from a gluten-eating moms.  Does this contribute to the gargantuan rise in celiac and autism?  Babies are born sterile but breastmilk has over 700 organisms to colonize and modulate intestinal permeability. If babies are born under circumstances where mom doesn't provide the needed commensal gut bacteria (overweight/obese mom (me, again), elective C-section, antibiotics at birth), it could be plausible IMHO that peptides like gluten in mother's milk will cross directly into the baby's blood circulation without the 'blockage' or junction tightening effect from missing commensals.  Gluten on its own also opens zonulin, further impairing, I suspect, a baby's gut permeability.

We may need commensal gut critters not only for immunity but also for chelation and elimination of modern, industrial heavy metals.  Studies show several soil-based bacteria microbes chelate and bind toxic metals.






Citations

Gravitz L. Nature. 2012 May 17;485(7398):S12-3.

Oregon State University (2013, September 16). Gut microbes closely linked to proper immune function, other health issues. ScienceDaily. 

Greer RL, Morgun A, Shulzhenko N. J Allergy Clin Immunol. 2013 Aug;132(2):253-62.

Esteve E, Ricart W, Fernández-Real JM. Curr Opin Clin Nutr Metab Care. 2011 Sep;14(5):483-90.

Blad CC, Tang C, Offermanns S. Nat Rev Drug Discov. 2012 Aug;11(8):603-19.

Ivanov II,  Littman DR.  Cell. 2009 Oct 30;139(3):485-98.




DePalma A. "Mercury’s Harmful Reach Has Grown, Study Suggests,"  NY Times 1/23/2012.



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Thursday, November 8, 2012

Mitochondria: Fuel, Fluxxx and Heat (NSFW)

Buddha Bar (Sex Lounge)
Credit: Youtube.com



Fuel and Fluxxx...

Why do we store fat? Why do we eat?  A scientist who wrote about reproduction, fuel, photoperiods and fecundity wrote the below abstract...[1]

"While there is a relatively direct connection between
circulating levels of metabolic fuels and the GnRH [gonadotropin releasing hormone] pulse generator [in SCN behind the retina], this might not be the only energy-related pathway influencing the secretion of this neuropeptide. The overall control of energy balance is an immensely complex process and a number of pathways involved in it might secondarily influence the activity of GnRH neurons. Peripheral signals influencing energy balance and thus possibly GnRH secretion could come from the liver, pancreas, stomach, duodenum or adipose tissue, and these signals could be sent to the brain via the vagus nerves or by hormones such as leptin, insulin, insulin-like growth factor 1 or ghrelin. These hormones could act directly on the neural circuits controlling the GnRH neurons or they could act by modulating the availability of metabolic fuel. Likewise, the neuropeptides regulating GnRH secretion in the forebrain could also include galanin, orexin, the urocortins and endogenous opioids. Recent interest has focused on kisspeptin, the product of the KISS1 gene. The presence of kisspeptin is necessary for normal reproductive development and it can override the reproductively detrimental effect of mild food restriction."

Obviously how we expend fuel is highly complex and humans are ruled by a big, big, big, hungry, hot brains... Grow or growl? Feast or fast? F-ck or forage? Repair or repast?





HEAT: Cellular Bioenergetics Creates Wildly Explosive, Exothermic Reaction Generating Water



CALORIES IN  ≠  CALORIES OUT

...we are not neat bomb-calorimeters, but open, conserved, networked metabolic and energy systems...

Photos credit: [2].













The Evolution of Body Heat?

When oxidized, the great majority of our food and stored energy goes to the production of HEAT.      What governs this? It is multifactorial but adrenaline, thyroid, cortisol and mitochondria quality are just a few [2]. Active tissues contain more mitochondria. Heat makes us mammals and birds. We have hot bodies, precisely 37C for the great majority.


In the 'Hot Brain:  Survival, Temperature, and the Human Body' the authors theorized that temperature gave us advantages over eukaryotic infections (yeast, fungal origins -- we are eukaryotic) which plagued bird/reptile species which were not armed with high 37C temperatures or fever-inducing capabilities [3].  It is a very interesting theory. Control of thermoregulation (heat loss v. heat gain) is believed to have evolved in the brain of therapsids. Our sinuses are larger. Mammalian brains have a Circle of Willis where 4 arteries (internal carotids and vertebral arteries) provide a complete internal brain circulation with collaterals, such that despite blockage of one or more of the 4 major arteries circulation in the brain and to the body remains intact.  Unfortunately only 25-33% of us have a 'perfect' classic circle of Willis; others have degrees of narrowing or asymetry in certain areas or another. Photos courtesy: Hot Brain, pp. 44, 142.

Recently a microbiologist, Casadevall, from Albert Einstein had the same theory that the rise of mammals can be attributed to 'endothermy and homeothermy [which] are thought to contribute to mammalian resistance to mycosis by creating a thermal exclusionary zone that inhibits most fungal species. The remarkable resistance of mammals to mycotic diseases is probably a combination of a vertebrate immune system, with both innate and adaptive arms, and elevated body temperatures... The currently favored hypothesis for the demise of dinosaurs and end of the age of reptiles is a bolide impact approximately 65 million year ago with the possibility that other events, such as increased volcanism, contributed to disrupting the cretaceous ecosystem. That ecological calamity was accompanied by massive deforestation, an event followed by a fungal bloom, as the earth became a massive compost. Although one cannot know which spores were present at the time, the likelihood that pathogenic fungi existed at the K-T boundary is enhanced by the finding that the potential for pathogenicity probably arose independently several times in evolution...'[3]

'Although we do not know the timeline for the recovery of the planet climate, it is estimated that photosynthesis was shut down for 6 months and climate cooling persisted for at least 9 years, and the occurrence of a fungal bloom sufficient to have left fossil evidence implies that surviving animals were exposed to massive numbers of fungal spores. The darkened skies and cooler temperatures that accompanied the K-T cataclysm would have shielded the sun and reduced the ability of ectothermic creatures such as reptiles to induce fevers by insolation, a necessary activity for protection against fungal diseases. Hence, it is reasonable to posit that ectothermic creatures unable to induce behavioral fevers and in weakened states from environmental stress would have been at a severe disadvantage relative to small mammals with their innate thermal exclusionary zones for fungal growth. Further complicating the situation for reptiles is that eggs can be vulnerable to fungal attack, whereas mammalian progeny would be protected in placentae.'[3]

I think it has merit. We generate a lot of HEAT and it comprises a cr*pload of our total energy losses (as many in NY know without electricity due to Storm Sandy and no heat to fight night time drops to freezing temperatures). As Casadevall reported  'the mammalian lifestyle is energetically costly.'






Mitochondria: Water (H2O) = 286 kJ of P-O-W-E-R

Many obesity researchers appear to forget these multiple evolutionary and hormetic factors in their Big Pharma funded, tenure-track equations. One did not (though partly Joslin funded which is Big Pharma).


In a Nature article, Tseng et al discuss mechanisms to find a drug target to increase cellular bioenergetics and energy expenditure as an anti-obesity strategy [2]. (But... Drug targets are always silly, no?) They discuss PPAR-delta, AMPK and several other pathways with potential promise.  A succinct explanation of how mitochondria produce energy on demand by harnessing the energy from the formation of water in the cellular bioenergetics of mitochondrial metabolism of fuel is provided. They define bioenergetics as the 'Studies the flow of chemical bond energy within organisms. In a living cell, the principal reactions of fuel metabolism take place in the mitochondria, where food energy is released,oxygen is consumed, and water and carbon dioxide are produced.'

All life on earth utilizes the energy formed from water formation to power pathways and metabolism. Remember the Calvin Cycle/Photosynthesis where carbs (glucose) are formed from air (CO2), and energy of the sun? In the mitochondria, the opposite reaction occurs. Energy from the exothermic reaction of water forming from air (O2) and the enzymatic burning of fuel (oxidizable food, glucogen, glucose, fat) result in HEAT and ATP. When one mole of H2O is created from one H2 (hydrogen) and half O2 (oxygen), 286 kJ of power are released (in other words, 68 kcal, which is about one small potato).... FROM FORMATION OF ONLY ONE MOLE OF WATER.

CO2 1/2 O2  =   one mole H2O (~18 grams water = 3.5 teaspoons)  =  286 kJ






Fuel Efficiency of Our Mitochondrial Cellular Respiration

With cellular respiration, instead of an enormous, exothermic explosion (like a hydrogen bomb), the electrons and protons are added step-wise on a gradient known as the electron transport chain (ECT) in plants and animals.  A biological mitochondrial 'battery' is created with the 'anode' on the inner mitochondrial membrane side and the 'cathode' on the other.  Heat is energy released when oxygen is the final proton acceptor and coupled to the enzyme (F1F0-ATPase) that forms ATP, the universal currency of cellular energy in the body. When the protons fall across the proton channel, ATP is formed.  We use ATP as fuel every minute every day for all cellular work, then recycled back to ADP.  In one day, it is estimated that our mitochondria may produce our own weight in ATP [5].

Efficiency of the theoretical transfer of energy from oxidizable fuel to ATP and heat is pretty darn good: 39% ATP and 61% heat [5]. Mitochondria are energy rockstars. Obviously many biolgical factors determine true efficiency: iron status (cytochromes are composed of heme), ubiquinol, oxidative and inflammatory state, thyroid, HPA axis function, hormones, etc.

Plants (chloroplasts) get 3-6% efficiency from transfer of solar energy to the energy bonds of plant starches and fatty acids. Particular C4 plants can get 7-8% (sugarcane) and one super cyanobacteria strain Chlorobaculum tepidum achieves 10%. Various modern fuel efficiencies are approximately -- for coal (~20-30s%) and solar (20%). Photo credit: [5].



References

1. Climate change and seasonal reproduction in mammals. Bronson FH.Philos Trans R Soc Lond B Biol Sci. 2009 Nov 27;364(1534):3331-40.

2. Cellular bioenergetics as a target for obesity therapy.Tseng YH, Cypess AM, Kahn CR. Nat Rev Drug Discov. 2010 Jun;9(6):465-82. [Free PDF here]

3. The Hot Brain: Survival, Temperature, and the Human BodyCarl V Gisolfi, Francisco Mora Teruel. MIT Press (Bradford Book), 2000. [Free SCRIBD text here]

4. Fungi and the rise of mammals.Casadevall A. PLoS Pathog. 2012 Aug;8(8):e1002808.  [PDF]

5. http://highered.mcgraw-hill.com/sites/dl/free/0073525502/930160/mad25502_ch08.pdf

Monday, November 5, 2012

Phat Fat Mitochondrial Energetics: Mobilization v. Accumulation


Adipose is Alive

In ancestral times, adipose stores may have determined longevity and survival past harsh cold winters. My ancestors moved from northern China 8-10+ generations ago to the mountainous areas of Taiwan (according to my dad several hundred years ago). I suppose those who didn't live past the impoverished seasons where food resources were scarce would not have made it, nor would their genes. I can thank them for my persistent fat stores *haa*. Adipose tissue is an endocrine gland which is know to secrete hormones such as leptin and adiponectin to control hunger, body energy balance and energy expenditure. These hormones are involved directly with mitochondrial biogenesis as well, in other words the production and destruction of the mini powerhouses found in all cells (except perhaps glycolytic-dependent cancer cells, which I think are all of them).

Whole body energy balance are determined by many factors, including most importantly:
1) demand
2) diet
3) d*ng hormones (or lack of)



All Organs Sync For Survival

Our brain coordinates many of the hormones that either mobilize or store adipose, e.g. fat. The brain includes the hypothalamus, pituitary, pineal, forebrain, hindbrain, midbrain and our senses for perception (ears, eyes, nose, taste, temperature, barometric pressure, etc). For example, insulin is triggered cephalically (via the brain): by tasting sweetness whether artificial or real, by smelling food, seeing food or even imagining food. Hearing? Hearing the neighborhood ice cream truck as a kid?




Humans Killed for Fat

Fat may have been the biggest boon for man during evolution (see prior animal pharm: humans as marine-based carnivores). Fat contained omega-3s concentrated up the food chain from green chlorophyll sources (grass, algae, etc) and into the muscle fat, organ meats, brains and fat stores of animals and seafood. The encephalization of ancient man is believed to be highly associated with the intake of dietary omega-3s. Perhaps the current de-encephalization over the last 100 yrs is related to the relative deficiency of dietary omega-3s? Or growing overabundance of omega-6s? THANK YOU VERY MUCH corn-fed cows and Keys.




Fat Yields the Most Energy in Human/Mammalian Energy Systems

Hormones for MOBILIZING fat stores far out number the hormones that ACCUMULATE fat. See diagram, modified from Gary Taubes GCBC from a 1965 table of hormonal regulation. Forgive me I use the term 'hormone' loosely because food is hormonal. Fatty acids bind PPAR receptors. We have ~ 3-4 routes to produce energy (some cells utilize glutamine, but I don't know which... neurons only?). Burning fatty acids yields the highest net energy unit (ATP). Why I've wondered? So many hormones promote the escape of fatty acids from temporary storage -- intramuscular, liver, visceral fat, brown fat and subcutaneous fat. Why do we readily release fatty acid energy? Sex, power, survival/suicide? Heat for 37C?

Taubes quoted Hans Krebs who received the Nobel in Medicine in 1953 'All three major constituents of food supply carbon atoms.. for combustion." GNG= gluconeogenesis (glucose/glycogen from any source -- protein, fat, carbs); ATP lesson (click HERE and UCD Lecture and med biochem):



Low Yield but Mandatory Without Oxygen
--anaerobic glycolytic (glucose/GNG) [Yield: 2 ATP]


High Yield in the Presence of Oxygen
--aerobic glycolytic (glucose/GNG) [Yield: 38 ATP] 
--aerobic beta-oxidation of fatty acids like palmitate [Yield: 129 ATP]
--aerobic beta-oxidation of fatty acids like stearate [Yield: 146 ATP]
--aerobic beta-oxidation of fatty acids like ketones [Yield: 51 ATP]
--aerobic oxidation of alcohol [Yield: 16 ATP]


Carbon lengths:
Glucose: 6-carbon carb
Palmitate: 16-carbon saturated fatty acid
Stearate: 18-carbon saturated fatty acid
Ketones (b-oh-butyrate, Ac-Acetate): 4 carbon fatty acid
Alcohol: 2-carbon 'the fourth food group' *haa* tequila is paleo, no?

Prior animal pharm: Palmitate Utilized Between Meals




Mitochondrial Medicine

Where does all this high energy production occur? Of course. Your mitochondria (the lower-net-energy anaerobic pathway is independent of mitochondria, occurs in the cytoplasma).

So. Don't scr*w up your mitochondria. That's like jacking your ride. Blowing out your carburetor.

...FLUNKING your human SMOG TEST.

Mitochondrial medicine is a new field but old premises still apply. The paleo evolutionary paradigm for which your mitochondria and DNA were perfected and honed over 2.5M years of natural and sexual selection are what we believe optimize health and maximize vitality.