Showing posts with label Shanghai. Show all posts
Showing posts with label Shanghai. Show all posts

Tuesday, September 24, 2013

Feeding the Microbiota: Non-Starch Polysaccharides (NSP), Resistant Starch (RS) and Mucous


RESISTANT STARCH GRANULES

"During the co-evolution of man and microbes, the human intestinal tract is colonised by some thousand species of bacteria. Gut borne microbes outnumber the total of body tissue cells by a factor of ten. Recent metagenomics analysis of the human gut microbiota has revealed the presence of some 3.3 million genes, as compared to the mere 23 thousand genes present in the cells of the human body tissues."

--Rijkers et al, Gut Microbiota in health and disease: a personalised summary of 
the 3rth workshop



Everything Our Microanimalia Do For Us
How Shall We FEED THEM?

Seed, Weed and Feed the GUT

I've talked already about many ways to seed the gut (fermented foods, SBO probiotics, dirt, etc) to complement the existing microbiota and weed the gut -- removing toxins, mercury, pathogenic overgrowth, parasites and worms.  How should we properly water and feed the gut?

The primary foods are fiber, mucous and starch that resists small intestine digestion. If the gut is diseased, crowding out pathogens and removing parasites is also important. If the microbiota lacks diversity, then diversity needs to be cultivated and nurtured.  Studies show the obese, inflamed, autistic and heart diseased lack microbiota diversity of species and phyla.

Feeding and nourishing the microbiota isn't a special skill... our ancestors thrived and survived in special microecological as well as macroecological niches... and so did the gut microbes.  How did ancestrally derived foods benefit the microbes and what do they specifically provide for us?  Do we rely on them for immunity? For activation of important immune factors (glutathione, our #1 master antioxidant)?  For activation of plant-derived antioxidants like lignans, etc?  For removal of toxic and carcinogenic bile acids?  To balance the steroid hormone pool?

Yes to all.

I like ancestral diets. They must've worked I figured because we are here...

Being Asian I enjoy starches and after regaining insulin sensitivity (after being 50 lbs overfat), I burn starches adequately during glycolytic activity. With VLC/ketosis, I had cortisol dysregulation and to heal metabolism fully I had to eat carbs regularly. Being previously metabolically broken and still recovering from some toxicity (heavy metals, contraceptive endocrine disruption), however, I don't overdo the starches because I'll notice that I regain bodyfat mega fast.  Typically intake may be 1/4 of plate at most meals).

Our family eat certain starches regularly -- carrots, radishes, steamed pumpkin, bamboo shoots, fermented sauerkraut/carrots/radishes, tubers (yellow, purple, white, small potatoes, yams), flours (tapioca, sweet potato) and soaked grains/seeds (psyllium, millet, sorghum, black sesame, rice (purple, brown, white, glutinous)).   The variety depends on what is in season and carried by the organic farms -- Mahota, FIELDS, BioFarm/Cityshop, etc.  All the above contain both fiber and resistant starches (RS) which the microbiota feed on.  Ultimately, both types of microbial food benefit us on many levels.

In fact some studies show synergism when both fiber and RS are consumed together compared to fiber alone (beta-glucan) or RS alone for insulin and glucose reduction and regulation. Behall, et al:  synergism -- MEN and WOMEN. Below is the outcomes from the female study examing the impact on BG and insulin with intake of beta-glucan + RS. The levels of both were modulated low v. high and vice versa. Higher beta-glucan and higher RS produced the most marked improvements in metabolism. High amounts of either were satisfactory as well (see yellow/insulin,  orange/glucose lines and green circles).  Low amounts of either fiber or RS, not nearly as wonderful metabolic outcomes in this study.



Beta-glucan is a special soluble fiber (NSP)-- it's not made by mammals. It's found in yeast cell walls, whole grains, and mushrooms.  It's been shown to not only affect the microbiota but also improve immune function, wound healing, metabolic dysregulation, cancer/tumour sizes, and inflammation.  A recent study tracked the fate of beta-glucan in the gut and immune lymphoid tissues.  Researchers found "these large -1,3-glucans were taken up by gastrointestinal macrophages and shuttled to reticuloendothelial tissues and bone marrow. Within the marrow, the macrophages degraded the -1,3-glucan and secreted small soluble biologically active fragments that bound to CR3 of mature bone marrow granulocytes. Once recruited from the bone marrow by an inflammatory stimulus, these granulocytes with -1,3-glucan-primed CR3 could kill iC3b-coated tumor cells."

Resistant starch (RS) is found to be quite as plentiful as beta-glucan and plant fibers however cooking breaks it down to a form that we can digest (enzymatic, mastication, acidic).  The amount remaining in a food that escapes our digestive juices varies by many factors -- species, maturity of the plant, cooking/cooling methods, food acidity, to name just a few. RS is different from beta-glucan and fiber due to its tightly bound double helical glucose polymer structure.  Yes it is coiled up like DNA....  Solubilization in cooking water 'releases' the starches into a gelatin matrix which our spit amylases and pancreatic carb-ases can breakdown to glucose for absorption in the stomach and small intestine.  Any undigested amounts enter the caecum and colon.  The amount of SFCA produced upon caecal and colon fermentation varies as well depending on an individuals microbiota species, large intestine health status, etc.

The average intake of RS in China is 14.9 g/day from wheat, rice and starch products (mung bean, sweet potato noodles); compared with average USA 3-8 g/day intake it is about 2 to 5 fold increased. However, I don't think this holds true any longer for Chinese urban dwellers. When my parents grew up in a small rural village in Taiwan (with pigs and 'home organic' e.g. subsistence farms), they were poor and only ate potatoes, yams, mung beans, rice, and vegetables with very scarce meat/fish/pork belly or chicken or eggs. I believe their childhood intake fiber and RS intake were far more than currently, if not triple or quadruple.

Combined with veggies, most people's diets contain a mix of carbohydrates: rapid digesting (simple sugars, disaccharides), slow digesting (complex carbohydrates), nonstarch polysaccharides (FIBER = b-glucan, xylan, glycan, gums, pectin, mucin, cellulose, hemi-cellulose etc), and resistant starches (RS) to fuel both our human cells and the microbiota.  Our microbiota in the large intestines will eat and ferment fiber, RS, and the mucous produced in the protective layer of the gut.

Most Dietary Starches Contain Both b-Glucan or other soluble fiber + RS
Source: Behall et al


For SIBO and intestinal permeability, it's actually healing to minimize fermentation if it is occurring pathogically in the small intestines... where it shouldn't be.  The surface of the small intestines is not designed to support extensive networks of microbial growth which requires thick mucous.  The integrity of the small intestines can easily be compromised and fail to serve its function (digestion and absorption) when inappropriate growth manages to perpetuate whether it's 'good' v 'pathogenic' bacteria, yeasts or mycobacteria or parasites/worms.

The ONE (optimal nutri eval) is one of the best tools to measure the microbial/fungal metabolic by-products in the urine by opportunistic and pathogenic species in the small intestines.  The GDX/Metametrix GI function stool test is unique to identify microbial overgrowth, dysbiosis, pancreatic digestive enzyme capacity, small intestinal fat/fiber/protein malabsorption, and parasites/worms as well as assess microbial sensitivity to herbal and pharmaceutical antimicrobials.

Diet absolutely shifts bacterial communities in the gut ecology -- simple sugars lowers the good, raises the bad. More fiber and RS both raise the good (in Bacteroidetes -- Prevotella, etc), lowers the bad (in Firmicutes -- virulent strains of clostridas, E. coli's, enterococci, streps).  This is borne out in pig, children and human studies.  Flint et al do a great review here which includes a raffinose study (fiber from legumes) that enriched and ↑ F. prausnitzii, Bifidobacterium spp.  Like many of the good gut flora, Bifidobacter tightens up the intestinal tight junctions as super tight as a nun's **ss, which is enteroproctive and immunoprotective again gastroenteritis, intestinal permeability and necrotizing enterocolitis in trials. Guess what?  Magnesium deficiency compromises Bifidobacter and intestinal permeability (or which came first?).  Bifido appears to enjoy magnesium. In rodent studies fed a mag-deficient diet, intestinal permeability and quantitative changes to cecal bifidobacteria were associated.

My kids and I have scr*wed up Bifido (not bad but could be far better -- 3.2; Brent Pottenger's Bifodobacter is over 20% more and rocks at 3.9)... and we have low mag...  Brent has also has had zero cavities and therefore zero mercury amalgams.  Perhaps my fam and I need to forage us  some raw unpasteurized human breastmilk because it is enriched with Bifido?

Below is a human study n=10 on the microbiota shifts comparing RS2 and RS4 intakes (55 grams/day x3wks, then 2 wk washout).  Even among resistant starches, there is selective species enrichment.


The authors state in the results:  "Ten human subjects consumed crackers for three weeks each containing either RS2, RS4, or native starch in a double-blind, crossover design. Multiplex sequencing of 16S rRNA tags revealed that both types of RS induced several significant compositional alterations in the fecal microbial populations, with differential effects on community structure. RS4 but not RS2 induced phylum-level changes, significantly increasing Actinobacteria and Bacteroidetes (+++)while decreasing Firmicutes(-). At the species level, the changes evoked by RS4 were increases in Bifidobacterium  adolescentis and Parabacteroides distasonis, while RS2 significantly raised the proportions of  Ruminococcus bromii and Eubacterium rectale when compared to RS4. The population shifts caused by RS4 were numerically substantial for several taxa, leading for example, to a ten-fold increase in bifidobacteria in three of the subjects, enriching them to 18–30% of the fecal microbial community. The responses to RS and their magnitudes varied between individuals, and they were reversible and tightly associated with the consumption of RS."


Similar enrichment in enterocytes occurred in a rat weanling study feeding either basal diet or RS 5% for 28 days. I like this study because it demonstrated increased glutathione (our #1 master antioxidant; I have a GSTT1 deletion so mine is mildly compromised) by over 2-fold and improved pancreatic elastase secretion (digestive enzymes) in the RS fed groups.  [***Personally I eshew all rat studies unless they're vegetarian studies because (1) rats don't have a gallbladder and (2) they're not as omnivorous as humans or pigs so the data is incomparable, particularly the (ludicrous) meat/colon ca/nitrosamine studies.]



Shifting Microbiota Communities: GI Fx Stool Test and Optimal Nutri Eval (ONE)

Brent Pottenger's case:  Recall his Prevotella, Bacteroidetes and Firmicutes are quite stunning and no biomarkers of dysbiosis.  He has likely very little mercury (no history of cavities). His diet: near carnivory, fermented full fat Greek + some veggies both raw/cook (per Pottenger's cats).  The microbiota sequencing reveals a beautiful display of healthy guts.  Previously he c/o acne and migraines which are signs of SIBO and intestinal permeability.

My case: The Prevotella, Bacteroidetes and Firmicutes (2013) are impressively improved and robust compared with the initial 2011 when I had CFS, fogginess, fraility (sarcopenia), rank mood, and on/off body fat.  The SIBO is gone except for residual dysbiotic biomarkers from a parasite and Morganella. [yes wtf I dunno where the origin was but my children also have pathogenic overgrowth or parasites but we all different. I suspect I got it from one the irresistable poopers, see below]

Would you like to do a GI fx stool test and see your microbiota and do a ONE to evaluate nutrient deficiencies, dysbiotic markers and 8OHdG (DNA damage)?  Let me know and show me!  (Cost $99 and $129, respectively, plus admin fee $50).  Let's conduct paleo gut experiments.



What had I done?
--for two years
  • gluten free, casein free, exercise/yoga (some barefoot on soil/lawn)
  • removed mercury, gold, titanium parts and oral chelation on/off
  • sleep, adrenal/gut support, antioxidants incl pycnogenol, omega-3, minerals
  • Prescript Assist, FloraMend
  • whole food diet (rainbow tubers, veggies, organic meat, lard/ghee)
  • fermented pao cai, Beijing radishes, carrots


--for two months prior to the GI fx stool test
  • Seed: Raw unpasteruized sauerkraut at nearly every meal and drank the brine, SBO probiotics
  • Weed: charcoal and bentonite clay; removed gut irritants (alcohol -- studies here and here)
  • Feed: Kraut and fiber rich foods (basmati rice, vegetables, potatoes, etc)




Energy Flux and Metabolism in Superorganisms

I consider this formula for energy flux:

Calories In (SUPERORGANISM) = Calories Out (MICROBIOTA) + Calories Out (HUMAN) + HEAT*Fluxxx



Rapid and slow digesting starches (RDS, SDS) impact blood sugars and insulin sensitivity by raising BG. The effect on insulin sensitivity and how they burn fat in the mitochondria actually depends on the individual, their insulin sensitivity and the carb/glycemic load.  See Major Paleo De-Mything.

On the other hand, insoluble or soluble fiber and RS do not raise insulin or blood sugars. In fact fiber and RS have been shown in several trials to behave like protein and omega-3 fats by raising insulin sensivity.  Both fiber and RS naturally have glycemic indices of 'zero', 'bulk' up food, increasing fecal transmit time as well as fecal microbial biomass. Combined with digestible carbs, RS and fiber both tend to prevent spiking of glucoses, thus blunting the effects of high GI (glycemic index) foods and sweets. Both fiber and RS definitely lower inflammation but appear to do so via routes which are intimately tied to the microbiota.

Role of the Gut Microbiota in Nutrition and Health




The mouth and stomach digest ~10% of our carbs and the rest 90% is digested in the small intestines if all is functioning (pancreas, gallbladder, oral amylases, GI acidity, microvilli brush border enzymes, pepsin secretion, bile, peristalsis).  What escapes small intestinal degradation is later fermented by the microbiota in the large intestines (caecum, appendix, colon) to volatile organic acids, known as short chain fats -- acetate, proprionate and butyrate.  Although microbial byproducts provide some fuel to us  and the local enterocytes in the gut ecosystem (~10% of our total energy requirements compared with ~30% in other omnivores), actually much of the butyrate and other SCFA goes to provide energy to the microbiota . See above diagram 'Fermentation -- energy for bacterial growth'.  From my reading this amount varies. The SCFA collected at the colon depends on inflammation, IBD status, diabetic v. nondiabetic, etc.  I think it reflects SIBO and intestinal permeability factors which affect the microbiota.

SCFA play a role in the immune system and metabolic pathways by as binding fat-sensor receptors such as PPAR alpha, gamma, delta and GPR41/43.

How we chew the food and shear the particle sizes of resistant starch granules determines how much may be broken down in the small intestines. The first, top diagram above shows how digestive amylases 'etch' granules of resistant starches recovered in the intestines.  Food preparation also transforms the digestibility, crosslinks and polymerization of the starch matrix.  Longer heat, higher boiling/gelatinization, and maturity of the plant are all factors that predispose to higher digestibility and potential blood sugar impacts.   Cooling the starch and adding acidity (lemon, vinegar, fermentation) all lower small intestine digestibility by changing the coagulation of starches and protecting the starch granules from enzymatic degradation. Both refridgeration and autoclaving (high moist heat) polymerize the starch chains and raise RS.

So certain foods will have more RS as a result of food prep compared to the original food:
Fried rice or 'al dente' rice versus rice boiled in large volumes of water
Cold chinese rice ball snack rolled in lard/oil and seaweed versus warm steamed white rice
Sushi rice (room temp rice, sweetener +vinegar) versus warm steamed white rice
German cold potato salad with vinegar versus a boiled LARGE American monoculture GMO potato
Whole grain wheat pasta versus overboiled white pasta

Fermentation breaks down RS
Boiled poi (more) vv. Fermented poi (less)
Unfermented cooked rice v. Fermented Indian dosa rice or idli (less)

Autoclaving polymerizes amylose so raises RS
Processed (heating/reheating process) Uncle Ben's rice (but beware of the endocrine disrupting plastic it's encased in) v. freshly cooked long grain rice (less)




Evolution of RS

The amount of resistant starch appears to me to be related to the amount of protein in the tuber or grain/seed, on cursory review. I've tried to dig further but can't find anything.  The food sources which appear to have the most RS are the starch containing foods with intact cell walls and higher protein content legumes (9.5-11.1% dal, lentils, beans), whole grains (4.5-6%), or complete proteins (2% potato; 4.8-5.9% processed non-modified PS; steamed/cooled potato 31% and roasted/cooled potato 52.5%).  Perhaps amylose and other RS protect the peptides embedded in the starch matrix for tuber and grain/seed winter storage to buffer the Ice Age chill? Sprouting and germinating grains/seeds raise protein and nutritional content, but lowers RS.  Additionally, fermentation of starches is a trade-off -- fermentation lowers RS but raises protein/vitamin content.
I GAVE HER PROBIOTICS SINCE
THE FORMULA DIDN'T HAVE
ADORABLE POOPER

Saturday, September 21, 2013

Why We Are Sick and Fat: Calories In (SUPERORGANISM) = Calories Out (MICROBIOTA) + Calories Out (HUMAN) + HEAT*Fluxxx

Gut Permeability = Why We Are Sick and Fat?
Photo credit: Gravitz. Nature, 2012.


Microbial Influence

We co-evolved with the microbes in our gut to escape pathogens, parasites, predation and starvation (emo, nutritional, mental, etc), whilst hunting for palatable food, prey and partners.  (Isn't your partner palatable?) Simultaneously we enjoy all benefits that our co-existing gut microanimalia provide -- digestion of indigestible fibers/resistant starches, butyrate/short-chain-fatty-acids, neuroendocrine modulation, boosted immunity and tolerance, to name only a few.  They weigh 1-2 kg in our daily feces, contribute to massive biofilms (slime communities) in our guts and sinuses, and line every interface where human interiors meet exteriors.  The microbiota are not a small forgotten organ any longer.

It has been realized for decades that 70-80% of human immune cells are in the GI system; I believe however a large proportion (70-80%??) of our total immune system IS the gut microbiota. The # of genes collectively in a microbiome are 150 times larger than the genome of their host human. Besides digestion and metabolism, our microbiota perform far more than we perhaps currently understand in cross-talking with the immune system, its maturation and role in homeostasis and energy balance.


Dysbiosis and Intestinal Permeability as Origins of Disease


Emerging data like the study reviewed here showing the rodent T1DM disease model was averted by the presence of a soil based microbial strain known as SFB (segmented filamentous bacteria; genus Arthromitus) confirm and highlight the vital role played by commensal gut species in our immune system. I find it notable that the hearty and robust spore-forming ones that originate from dirt sources are producing some of the most interesting scientific findings since we co-evolved with ancient dirt for millenia.

Since the vast majority of microbial fermentation occurs in the caecum, appendix, and remainder of the large colon in humans, our small intestines are nearly sterile and absent of bacteria and fungi except at the end (ileum) where commensal species take residence.  Studies on TH17, one of the important arms of the immune system, show that no TH17 cells will appear in the small intestines until commensal microbes inhabit the area. Germ-free rodents will miss an entire arm of the immune system until colonization with introduction of a SFB-containing commensals.



Toxic and Germ-free Fetuses, Babies, Children and Adults

The collective status of our guts pretty much reflects the status of our current macroecological niche for humans I think... massively insolvent, blatantly bereft of vision, and irrevocably impoverished.  In China I read everyday of villages blighted with river and ground water poisoning by illegal corporate dumping of industrial waste.  Post-modern towns are plaqued with leagues of cadium or arsenic poisoned children. Even locally in our neighborhood Pudong, Shanghai, lead toxicity was detected in many children living near manufacturing plants called Johnson Controls International Battery Inc.  In the USA, coal burning which provides 30-50% of current energy demands has tainted the air/water/soil and caused mercury and arsenic accumulation in marshes and wetlands and the flora and fauna that reside there. Birds no long sing, woo, mate or care for their young appropriately.  Mercury-toxic birds are literally the canaries in our toxic macroecological niche.  What about human canaries, our children?  I think epidemic rises in toxin related diseases are accurate and reliable reflections because toxins disrupt the intestines and microbiotia:
--AUTISM (1:50 currently compared with 15 years ago 1:10,000)
--CELIAC DISEASE (6.4-fold increase in 20 yrs, Scotland)?
--OBESITY AND METABOLIC DISEASES

Our hyper-hygiene and dirt-avoidance culture extends to the over utilization of potent broad spectrum antibiotics piled into the feed of poultry, pigs, cattle dairy/egg production and in modern conventional healthcare.  In the a new study by Stanford researchers, the mechanism for why pathogenic gut strains invade after a single course of antiobiotics has been illuminated.  Pathogenic strains C. diff and S. typhi are shown to take advantage of the abundant sialic acid and fucose sugars that are left after antibiotic extermination of 'good' commensal gut flora.  The researchers also report in a model where C. diff and S. typhi were genetically altered to fail to utilize sialic acid, expansion by the pathogens was impaired.




Modern Obesity: Inflammation, Intestinal Permeability
Modified: GREER, MORGUN, AND SHULZHENKO, 2013

Toxins Delete the Good Microflora, Stimulate the Bad Microflora

When I had toxicity from gluten, oral birth control, antibiotic overutilization, thimerosal vaccines (tetanus, annual flu, blah blah blah), titanium and mercury amalgams, I had no idea that each and every one of these factors promote pathogenic gut flora, vitamin B12 deficiency, and kill or inhibit beneficial 'good' gut flora.

 Did these toxic factors make me fat?  Absolutely.

It was not [CALORIES IN = CALORIES OUT].

Fermented Fiber Produces SCFA Which Activate Immunomodulating G-Protein Receptors (GPRs): In pubmed studies, each of the above toxic factors are highly linked to gut dysbiosis and obesity.  Stopping or eliminating each of the above eliminated subsequent inflammation and obesity for me (combined with Asian paleo + exercise).  Understanding the human superorganism anatomy and physiology gives pause to recognize the role the gut flora had in the ups/downs of my health over the decades.  Recall about ~10% of total energy expenditures are estimated to be supplied by hindgut fermentation that occurs in the caecum and colon (versus 20-30% for other omnivores).  Production of SCFA, small chain fatty acids (acetate, proprionate, butyrate), and other downstream metabolite byproducts (succinate) bind receptors known as FFA2/FFA3 and SUCNR1, respectively, that control and regulate inflammation (TNF, interleukins, NFkB) and immune function.  Metabolite sensing occurs through these G-protein receptors much like how omega-3 EPA+DHA bind 'omega-3 receptors' GPR120 and elicit their anti-inflammatory and immunomodulating actions.  FFA2 (GPR41) receptors are found in enteroendocrine cells, adipocytes, neutrophils, eosinophils and pancreatic islets; and FFA3 (GPR43), enteroendocrine cells, pancreatic islets and sympathetic ganglia.

I believe these effects on GPRs design a metabolic flux which tunes metabolism UP and DOWN based on the messages that our food, movement, minds, and microbiota co-create.  My new formula for comprehending energy balance might be...


     Calories In       = Calories Out (MICROBIOTA) + Calories Out (HUMAN) + [HEAT]*FLUXXX
(SUPERORGANISM)

Main pathways of energy metabolism for dietary fats, fiber and carbohydrates
Fermentation of indigestible fiber and resistant starch to SCFA
Photo credit: Nature Reviews



Diabesity:  Recall pesticides are highly associated with Diabesity.... Coming to China actually forced our family to go as much as we can 100% organic and non-GMO (although all labels are dubious).  In the States, when my in-laws cooked for our family I didn't have control (eg they were too cheap to buy organic).  In the USA, the organic label is also dubious to me but for the most part it's way way way better than in China.


Recent research demonstrated that glyphosate (Round-Up Ready) allows growth of pathogens and kills the friendlies in studies of intestinal microecology in chickens.  EWP studies show babies and people's toxomes contain on average 200-300 known carcinogens, chemicals, heavy metals and pesticides. 100% of all participants (n=9) in the EWG #1 Commonweal Study had metabolites of organophosphate pesticides, and 55% -- organochlorine pesticides.   Do pesticides in our food and contaminating our water/soil disrupting our gut? I would say emphatically yes.  In China, Round Up Ready sweet corn is mega popular.  China imports that and millions of metric tons of GMO cotton, soy beans, corn, rapeseed and sugar beet.

For several years now, commercialized GM cotton, papaya, sweet pepper, tomato, poplar, and petunia have been grown without public awareness.  One journalist reports that 90% of China grown cotton is GMO cotton (2008).   The report also found 40 billion tons of soybeans were imported  in 2009.  GMO Soy likely goes into thousands of Chinese products here -- (rancid) cooking oil, animal/poultry/aquaculture feed, tofu, soy milk, soy sauce, etc. 40 BILLION TONS OF GMO. Asians love their soy OY OY OY... It's truly the land of sarcopenia and soy, no? Is this behind the epidemic of obesity and diabetes in China among children, adults and elderly alike?

Chinese companies offer a ton of Glyphosate (Round Up Ready)
Source: Alibaba


Horizontal Gene Transfer.  Does horizontal gene transfer (HGT) between DNA from consumed GMO corn and corn products to our gut microbiota occur? Another emphatic YES.  How do you reverse it if your microbiota is transformed? I wish I knew... Bacteria and fungi live in biofilms and exchange DNA within the matrix.  Like a meme gone viral.  Evidence for both DNA and lectin proteins from GMO Bt corn has been found in animals and humans that consume Bt corn. The DNA was found to survive and persist for a long time in the gut/rumen.

Photo credit: Heritage J. Nature, 2004.


I talked about Bt corn previously here: 50 Shades of F*ckd and Cancer.  Every pesticide corporation has a GMO Bt corn brand.  Bt is a lectin (like gluten) and disrupts intestinal epithelium in susceptible victims which can lead to gut dysbiosis and/or death.  It was very effective pesticide in the beginning.

Rootworms and other pests have rapidly shown field resistance to nearly every brand -- Syngenta's Agrisure and Monsatan's YieldGuard.  Dupont/Dow's Herculex has not as much, therefore Monsatan has reported they are planning to incorporate Herculex to synthesize TWO TOXINS into their new SmartStax corn -- in an attempt to overcome inherent field resistance. GMO is brilliant, no?

Unfortunately significant Bt lectin protein has been detected in fetus, pregnant women and non-pregnant women in already one clinical trial. Can we look forward to double the toxins next?  Can we afford to because we are kinda 50 Shades of F*ckd already...




Boobies and Breastmilk Microbiota

Symbionts Are Everywhere:  Our microvilli produce siliac acid and fucose (9- and 6-carbon sugars) at the tips for commensal gut flora to feast and graze on. I call it 'pharming the gut'.  Again, like much of life on earth -- hominids, insects, fish, frogs, mammals -- we have evolved with gut symbionts, encouraging them to take residence and producing incentives for their maintenance.  We should strive to avoid screwing our symbionts...

The baby-mother relationship is another example of the ultimate symbiosis.

Babies receive everything from mom -- life, love, heat, immunity (IgM), food, and water.  It's one of the most symbiotic relationships on earth outside of pair-bonded couples and tight knit families and communities. The baby is born sterile with no immune system, relying on mother's immunoglobulins to handle environmental viral or microbial assaults.  If advanced hominids and other mammals outsourced 70-80% of its immune system to gut microbiota, what does the timeline for acquisition of gut flora look like in babies?

Photo credit: Fernandez L et al, 2013.


Initially breastmilk was considered sterile but like many things in science, this was inaccurate. Colostrum contains over 700 live organisms (European Society of Neurogastroenterology and Motility: Gut Microbiota Worldwatch). Are these important? Why? Lysates of strains such as Lactobacillus and Bifodobacter have been shown to tighten up the intestinal tight junctions. Several strains in probiotics have been shown to be associated reduced mortality in NICU settings and against often fatal necrotizing enteric colitis.

Although babies are born with leaky guts to accomodate mothers' large proteins direct access into blood and lymph circulation  (immunoglobulins, IgM), they appear to get a lot of help from natural commensals to switch and develop intestinal impermeability.

Photo credit: Cabrera-Rubio et al, 2012.

Where does mammary microflora originate from? Some researchers hypothesize there is a special conduit that transfers gut flora to the mammary glands, an 'entero-mammary pathway'.  Lymph circulation? It is unknown and not entirely elucidated.  Researchers looked at microbiota in breast milk (at 0 mon/colostrum, 1mon and 6 months), different areas of the mother's body and compared flora between elective C-section and vaginal/non-elective C-sections. Breastmilk from C-section moms resembles mouth/oral and skin flora; whereas, breastmilk from moms who went through vaginal birth or some modicum of vaginal delivery that ended in non-elective C-section (that was me) showed flora that matched the gut and feces. Birth does something to make proper milk.  "The fact that the milk microbiome of mothers who gave birth by nonelective cesarean section had a normal microbial composition that was comparable to that of breast milk from mothers who delivered vaginally suggests that physiologic (eg, hormonal) changes produced in the mother during the labor process may influence the composition of the bacterial community."

Another finding from this study was 'Milk from obese mothers tended to contain a different and less diverse bacterial community compared with milk from normal weight mothers.'

Are Toxins + Early Post-Natal Gluten Exposure J*cking Us?  Gluten peptides also traverse and are dispensed to the baby during lactation from a gluten-eating moms.  Does this contribute to the gargantuan rise in celiac and autism?  Babies are born sterile but breastmilk has over 700 organisms to colonize and modulate intestinal permeability. If babies are born under circumstances where mom doesn't provide the needed commensal gut bacteria (overweight/obese mom (me, again), elective C-section, antibiotics at birth), it could be plausible IMHO that peptides like gluten in mother's milk will cross directly into the baby's blood circulation without the 'blockage' or junction tightening effect from missing commensals.  Gluten on its own also opens zonulin, further impairing, I suspect, a baby's gut permeability.

We may need commensal gut critters not only for immunity but also for chelation and elimination of modern, industrial heavy metals.  Studies show several soil-based bacteria microbes chelate and bind toxic metals.






Citations

Gravitz L. Nature. 2012 May 17;485(7398):S12-3.

Oregon State University (2013, September 16). Gut microbes closely linked to proper immune function, other health issuesScienceDaily

Greer RL, Morgun A, Shulzhenko N. J Allergy Clin Immunol. 2013 Aug;132(2):253-62.

Esteve E, Ricart W, Fernández-Real JM. Curr Opin Clin Nutr Metab Care. 2011 Sep;14(5):483-90.

Blad CC, Tang C, Offermanns S. Nat Rev Drug Discov. 2012 Aug;11(8):603-19.

Ivanov II,  Littman DR.  Cell. 2009 Oct 30;139(3):485-98.




DePalma A. "Mercury’s Harmful Reach Has Grown, Study Suggests,"  NY Times 1/23/2012.



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Tuesday, September 10, 2013

Korean Pepper Paste Burns Body Fat, Soil-Based Organisms (SBO), Gut Microbiota -- New Study 'Kochujang, fermented soybean-based red pepper paste, decreases visceral fat and improves blood lipid profiles in overweight adults'

Gochujang -- Staple at our House

When we first moved to Shanghai, we ate Bibimbap at least once or even twice every week.  It was our go-to comfort (Cali) food until our food sources diversified and expanded with the help of other expats and finding reliable organic/local/non-GMO purveyors.  Gochujang (which contains soil-based Firmicutes, B. subtilis, etc) is good for HEAT and tummies. The one on the right is a traditional product which I brought (eg smuggled) in from California (refridgerated area of the Korean shop in Albany, north of Berzerkeley). Both are Korean products but unfortunately the red one on the left is ubiquitious and popular in markets both in America and Shanghai, China. (BTW neither are gluten-free.) The first ingredient of the modern, processed version (red box) is guess?

Prior to 2008, apparently Korea didn't open its doors to GMO corn but that changed when the price of non-GMO corn went up to $400usd per ton (from $150); GMO corn was only $50usd per ton (source: ENN). Money talks and the grind of multinational corporations continues..?? Did this trump the price of cane sugar?!? GMO corn infiltrates internationally... Why does our food continue to become more and more perverted and unrecognizable (AND SUPRATASTY, ADDICTIVE, AND UNSUBTLE).




Ingredients (Right): Glutinous rice flour, Salt, (hopefully fermented and non-GMO) 
Soybean flour, Malt syrup, Hot Pepper Powder
Ingredients: (Left):  See below, it's the Korean SunChang brand 
(first ingredient: GMO CORN SYRUP; last ingredient 'seed malt')

Source :  Amazon




'Seed Malt' (?Arsenic, Heavy metals) in Modern Processed Gochujang

The tastiest ingredient is perhaps the most vile, seed malt. Even the traditionally prepared one contains malt syrup which is likely to come from gluten-containing barley malt.  I had to look up what seed malt is. In many Asian countries, the unami flavor is so desired and favored but hard to achieve from a food science perspective without time-consuming aging processes and fermentation.  Seed malt is the short cut.  Fast, cheap and full of nasties.  The starch that it is all germinated and cultured in is not specified but the food industry generally uses: corn, wheat, barley or the like.  Definition of seed malt (source: KFDA Korean Food Additives CodeThere are crude seed maltand powdered seed malt. Crude seed malt is obtained from a culture where starter of Aspergillus kawachii, Aspergillus oryzae, Aspergillus usamii, Aspergillus shirousamii, Aspergillus awamori or Rhizopus genus are separately or mixedly inoculated so that spores are inserted into a pasteurized raw material containing starch. Powdered seed malt is obtained by collecting pure spawn spores by a special method. 

Lot of fungal species...(but Aspergillus at least contains xylanases which break down gluten)

To eliminate the fungal species and 'clarify' I believe production of 'seed malt' uses an absorber which contains heavy metals and/or arsenic. This is a problem in German beer. Kieselguhr (diatomaceous earth) is used in beer processing to filter and remove yeasts, hops and particles (source: sciencedaily.com). How heavy metals and arsenic otherwise can test positive in a starch malt, I don't know. Fungicide-contaminated rice sources? HFCS (high fructose corn syrup) due to mercury containing chlor-alkali processing (Dufault et al, EH 2009)? Right: list of arsenic food contaminants (source: Codex Committee 2011).




Science Behind Ancestrally/Traditionally Fermented Gochujang

Being in Asia has certainly given me an appreciation of the variety of fermented foods in countries outside of the USA. We have always been fans of Korean food which has one of the most easily accessible sources because typically in the USA, every good Korean restaurant ferments their own variety of fermented tofu, beans, radishes, green beans, cabbage and raw crab/seafood... (as each family does in traditional homes that adhere to the old way... and after making our own hot pink sauerkraut HOT D**MN THIS IS A PART TIME JOB)

Good news, it is all worth it.

Fermented foods are packed with cheap prebiotics and even cheaper soil based organisms that make the gue microbiota a friendlier and happier place, crowding out overgrowths of yeast, parasites, worms and other un-friendlies and promoting growth of healthier gut epithelium and immunity (70-80% of our immune system is in the gut).





Brand Spanking New Study...
This clever study verifies many things that we know already.  Eating the poop/probiotics from healthy, lean people is perhaps not harmful for you...  It can make a mouse leaner, thinner and move from a fat phenotype to a leaner, less body fat profile.  Clostridia (Firmicutes) from Ln (lean) types invaded the guts' microbiota of Ob (obese) cagemates via copraphagia (eating of poo).

Recall, I like coprophagia... [cough cough] for B12-deficient vegans.  It's like a fecal transplant... (DIY fecal transplant: Silverman et al, 2010).






New Study: 'Kochujang [KCJ], fermented soybean-based red pepper paste, decreases visceral fat and improves blood lipid profiles in overweight adults'  (Cha et al, 2013)  [PDF HERE]

"The KCJ is produced by fermenting powder red peppers
combined with powdered meju (fermented soybean
powder), salt, malt-digested rice syrup, and rice flour for
about six months. The fermentation process extends the
storage period while increasing bioavailability of bioactive
ingredients [4] such as free amino acids, peptides,
alcohols, organic acids, capsaicin and flavonoids [5,6].
KCJ has unique flavors of sweet and hot red pepper
combined with savory soybean protein hydrolyzate and
nucleic acids. In recent years, KCJ has gained its popularity
outside Korea for its taste and health benefits derived from
the several ingredients [7-16] that are produced by the
fermentation process [17-22]. The functional substances
either singularly or in combinations have exhibited antiobesogenic,
anti-oxidative, and anti-mutagenic properties
in several in vitro experiments and in various murine
models [7-16]. Anti-obesogenic and anti-atherogenic properties
of fermented soy products have been demonstrated
in obese adults [23], possibly through modulation of
hepatic acyl-CoA synthase, carnitine palmitoyltransferase I,
and acyl-CoA oxidase [24]."

My Summary
  • The n=56 overweight subjects were given ~2 tablespoons of Kochujang daily (approx daily Korean consumption amount) as supplements in this RCT, and checked at 5 clinic weights during the 12-week long study duration.  Visceral fat was assessed by CT.
  • WHR (~0.9), BMI (~26-27%), body fat % (~33-34%), BP (~117-119/75) and HgbA1c (~5.4%) all did not change however both groups lost subcutaneous fat (47.9 cm2 v. 53.2 cm2, study v. control, respectively).
  • Visceral fat was dramatically dropped in the study group receiving the kochujang supplements (which were ++ in addition to regular daily amount) compared to placebo: -4.8 cm2 v. +0.4 cm2 (p=0.001).  ~~Ten-fold differences...
  • Interesting placebo effect on subcutaneous fat loss...
  • Perceptible changes in TG and apoB (which is super-tightly related to TG) were seen too (p=0.049). TG decreased.  It's hard to see HDL changes unless big weight, fat, dietary changes are seen, and that was the case.
  • Thankfully, none of the researchers were funded by SunChang (the modern, processed Kochujang manufacturer).


Thoughts? 

 I don't agree with their conclusions entirely. Yes, 'capsaicin in red pepper, isoflavon aglycones, and peptides from fermented soy' all are good things, but the placebo group probably ate these as well in small amounts (because they lost subcu body fat).  In fact, researchers admit they really are clueless stating 'However, the mechanisms responsible for these observed effects are yet to be elucidated.'




Evolution, Interspecies Guts, Soil-Based Organisms and Achieving Leanness

Discounting eating disorders and celebrity/model fanatics, most normal people can achieve leanness by normal lifestyle habits, balanced diets, fixing nutritional deficiencies, avoiding being 'germ-free' and broad spectrum antibiotics/antifungals, avoiding nutritional pitfalls (excess n6 pufa, excess refined starches, mercury, arsenic, PCB/pesticides/BPA/plastics and other estrogen-mimics), detoxing environmental toxins, avoiding stupid excesses (alcohol binges, brownie binges, sleep deprivation, chronic endurance sports, etc) and balancing hormones. All the above also fix the gut microbiota according to emerging pubmed data.

This study exemplifies it... though the research authors fail to identify the role of the gut, immune system, and microanimalia found in fermented kochujang.

Kim chee: The biome structure of kochujang's counterpart kim chee has been more deeply profiled.  Kim chee has been massively PCR microarrayed, and it does indeed also contain as one would expect (from dirt) archaebacteria and good yeasts (like Saccharomyces).  I cannot find in this article if the species S. boulardii  -- one of my favorite yeasts -- is listed but fermenting rice bran with S. boulardii yields  bioactive candidate metabolites that reduce B lymphoma growth in vitro.   Kim chee in most studies is characterized by 3 main genera LactobacillusLeuconostoc and Weissella. Particular species that are speculated to be found in kim chee cultures are: Leuconostoc species-- Le. mesenteroides, Le. kimchii, Le. citreum, Le. gasicomitatum, and Le. gelidum, the Lactobacillus species -- Lb. brevis, Lb. curvatus, Lb. plantarum, and Lb. sakei, Lactococcus lactis, Pediococcus pentosaceus, Weissella confusa, Weissella kimchii, and Weissella koreensis.

Human GITs (gastrointestinal tracts) are part-carnivore and part-frugivore.  Our shrunken, medium-sized small intestines possess exceptional digestive capacities and hyper-efficient absorptive surfaces synonymous with carnivores, not herbivores (3-5X our height, not 10X as in herbivores).   We have enzymes to breakdown protein, fats and complex carbs to base, fundamental constituents (amino acid, fatty acids, glucose). The rest (soluble and insoluble fiber) is fermented in the hindgut by our friendlies into further end-products that we harvest and absorb (B12, butyrate, etc)...

Kochujang is special.

Maybe it is because it is fermented and digested by dirt-commensal microbial critters in carby, high protein/fat environment (rice + soybeans? ...which are fatty AND proteinous (complete proteins incidentally).  Why it sounds... SO ODDLY... OMNIVOROUS...

Our gut microbiota in the large intestines has the ability to manufacture enormous supplies of butyrate, a short chain fatty acid, that plays an imperative role in healthy guts for regulating and controlling inflammation.  Butyrate is mostly produced by Firmicutes species.  Butyrate not only enhances the integrity of the gut by inducing mucin synthesis but also is the main energy source for colonic epithelia. By lowering inflammation, I believe, butyrate and gut microbiota synergism/cross-talk with immune system lymphocytes and gut epithelia produced the lowering of the (minor) visceral fat compartment and improvements in metabolic flux in the test subjects with Kochujang supplements.

Previous animal pharm:
Burn Body Fat Loss with Saturated Fat (Butyrate and MCT Oil)







Kochujang Contains Mostly SBO, Soil Based Organisms (E.G. FROM DIRT)

Kochujang has been analyzed it contains more soil-based organisms (SBO) Bacillus versus kim chee's Lactobacillus genera.  The bacteria in Kochujang is predominantly Firmicutes (93.1%) species, simliar to the SFB (segmented filamentous bacteria) discussed in the last post.

"Through the analysis of 13524 bacterial pyrosequences, 223 bacterial species were identified, most of which converged on the phylum Firmicutes (average 93.1%). All of the kochujang samples were largely populated (90.9% of abundance) by 12 bacterial families, and Bacillaceae showed the highest abundance in all but one sample. Bacillus subtilis and B. licheniformis were the most dominant bacterial species and were broadly distributed among the kochujang samples. Each sample contained a high abundance of region-specific bacterial species, such as B. sonorensis, B. pumilus, Weissella salipiscis, and diverse unidentified Bacillus species. Phylotype- and phylogeny-based community comparison analysis showed that the microbial communities of the two commercial brands were different from those of the local brands. Moreover, each local brand kochujang sample had region-specific microbial community reflecting the manufacturing environment [e.g. probably not SunChang, Inc]."  Source : Nam et al, J of Food Science, 2012.




Please Pass Your Good Cuddies/Firmicutes -- SBO Also Breakdown Gluten

The two most dominating species found in this study of Kochujang are soil based organisms -- B subtilis and B. licheniformis.  In experiments, B subtilis and B. licheniformis, digest gluten; they're frequently found in sourdough ferments, naturally-occurring on rice straw, Japanese traditional natto, Chinese fermented black bean sauce, Nigerian fermented soy 'Daddawa', Thai fermented foods, Indian fermented soy Hawaijar, fermented shrimp heads, Korean fermented black soybean Chungkookjang, and raw dairy.

The undigested gluten peptide, that is most toxic to celiacs and induces immuno-triggering damage to the small intestine, is broken down by enzymes from either B. subtilis* or B. licheniformis*.  HLA DQ2/8 on APCs have extremely attractive binding affinity ('epitope') to undigested gluten (for example, 33-mer alpha-gliadin).  Consequently, APCs will present undigested gluten to CD4+ T-cells as invaders, thus setting off the cascade of TH1, Th17 and Treg hyperimmune responses.

Celiac is actually an autoimmune disease of the DQ2/8-gluten complex (IC, immune complex) in the small intestines and other affected organs.  At least 60 immunogenic gluten peptide sequences exist in modern-hybridized industrial wheat.



Conclusion

In gluten intolerant folks, TH17 is usually slightly or entirely j**cked up.  TH17 may lack training/regulation, and intestinal hyperpermeability is likely present.  Food antigen intolerances consequently pop up secondary to hyperpermeability.  The commensals in the gut microbiota shape immunity and prime and promote the proper differentiation of TH17 and other cell subsets.  Is this one of the primary differences between the obese and the lean?  The gluten intolerant and the gluten tolerant? The celiac HLA DQ2/8 and the non-celiac HLA DQ2/8?  What gut toxins prevent seeding of commensals? Bt GMO corn? Mercury and other DPP-IV inhibitors (microvilli DPP-IV digests gluten)?

SBO and their molecular components appear to play a great part in re-balancing the distribution between arms of the vast immune system: TH1 v. TH2 v. TH17 v. Treg.  When the gut barrier becomes tight and competent again, food intolerances reverse or disappear.  Undigested gluten won't pass through.  The gut epithelium is but one cell layer thick.

Permeability perhaps is the bane of advanced hominids. We diverged from primates with zonulin, the gate keeper of intestinal permeability.

Why?  For the the continuation of post-natal growth of the gigantic human brain?  For the extended longevity and flexibility of advanced hominids? I'm not certain but I suspect it has to do with ontogeny and how our premature babies require maternal immunoglobulins, IgM in breastmilk, for 18 months to 3 years old of age for the immunoprotection until their own immune systems mature, interact with the environment and develop.

For some individuals, soil-transmitted hookworms are solutions and the key... together, SBO/dirt, kochujang, coprophagia, and 'kraut may be fine, and problematic pathogenic (microbial/yeast) overgrowth and parasites can perish.





SBO Related Sources and Probiotics:

These are all shelf-stable because SBO are spore-forming and don't require refridgeration. In immunocompromised and susceptible individuals, probiotics can exacerbate the root problem. Introduction of lactobacillus organisms, bifida, SBO or other probiotics may increase gas and bloating if SIBO (small intestinal bowel overgrowth) is severe, just as introduction of fiber/inulin/FODMAPs can induce gas and bloating until gut initation and adaptation has gradually occurred.


Probiotic that includes B. licheniformis:  Body Biotic

Protiotics that include SBO:
Prescript Assist (B subtilis, etc)
FloraBalance, Bacillus Laterosporus BOD
Ultimate Acidophilus with Bacillus Coagulans
AOR Clostridium Butyricum
Thorne Bacillus Coagulans
Threelac (B subtilis, etc)
Primal Flora (B coagulans, etc)
Primal Defense (B subtilis etc)   [the wildly successful original formulation had both, ~ + B licheniformis]


Gluten-digesting Digestive Enzymes:
Devigest (B subtilis + enzymes from B licheniformis, etc)



Sources: ASSESS and CNSweb.com


Catch This:  Making Gluten-Free Korean Chili Paste Gochujang (CriticalMas blog)